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Species belonging to selected taxon:

Drosophila melanogaster



ABOUT THIS RECORD

ID: MNEST006577
species: Drosophila melanogaster
miRNA family: miR-1008
source: miRNEST

Taxonomy by NCBI:
Drosophila melanogaster melanogaster subgroup melanogaster group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCACAGCTTTTTGTGTTTACA

miRNA*
TAAATATCTAAAGTTGAACT

mismatches: 3
bulges: 1

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pre-miRNA
CCTCAAGAAGAAGCTGAAGTTCCTCATCTATGTAAATATCTAAAGTTGAACTTGGCCAATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAGTAC
TTCCAGGATCTATTGC


dot-bracket secondary structure
........(((..(((((((..(((.(((.(((((((((..(((((((.(((((.((...)))))))..)))))))..)))))))))..)))..))).))
)).)))..))).....



SIMILARITIES
miRBase dme-mir-1008: 3e-26

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: dme-mir-1008 from miRBase (MNEST036591)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence





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